boost MPI install error

Jack Bryan

3 Aug 2010 3 Aug '10

4:54 p.m.

Dear All: I am trying to install boost on MPI clsuter with MPICH2. After ./bjam install, I compile a test program provided by boost.org . But I got errors: The program is :-----------------------------------------------------------------#include <iostream>#include #include namespace mpi = boost::mpi; int main(int argc, char* argv[]){ mpi::environment env(argc, argv); mpi::communicator world; std::cout << "I am process " << world.rank() << " of " << world.size() << "." << std::endl; return 0;}-------------------------------------------------------------- Errors: ------------------------------------------------------------------mpic++ -o testp2p test_p2p.cpp -I/home/boost_2010_8_1/boost_1_43_0 -L/home/boost_2010_8_1/boost_1_43_0/stage/lib -lboost_mpi -lboost_serialization/usr/bin/ld: warning: liblam.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link)/usr/bin/ld: warning: liblamf77mpi.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link)/usr/bin/ld: warning: liblammpi++.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link)/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_short'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_comm_map'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `op_intercept'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_errors_return'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Intracomm::current_op'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_comm_world'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned_char'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_char'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_err_map'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_group_empty'/home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_packed'collect2: ld returned 1 exit status ------------------------------------------------------------------- It seems that it needs LAM/MPI. But, the LAM/MPI has been installed: PATH=/home/openmpi_123/bin:/home/boost_2010_8_1/boost_1_43_0: ....... I used ./bjam --prefix=mypathand then ./bjam and then ./bjam installAny help is appreciated. Any help is appreciated. thanks Jack Aug. 3 2010

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Matthias Troyer

3 Aug 3 Aug

9:13 p.m.

Sent from my iPad On Aug 3, 2010, at 10:54 AM, Jack Bryan wrote:

...

Dear All:

I am trying to install boost on MPI clsuter with MPICH2.

After ./bjam install, I compile a test program provided by boost.org .

But I got errors: The program is : ----------------------------------------------------------------- #include <iostream> #include #include

namespace mpi = boost::mpi;

int main(int argc, char* argv[]) { mpi::environment env(argc, argv); mpi::communicator world; std::cout << "I am process " << world.rank() << " of " << world.size() << "." << std::endl; return 0; } --------------------------------------------------------------

Errors: ------------------------------------------------------------------ mpic++ -o testp2p test_p2p.cpp -I/home/boost_2010_8_1/boost_1_43_0 -L/home/boost_2010_8_1/boost_1_43_0/stage/lib -lboost_mpi -lboost_serialization /usr/bin/ld: warning: liblam.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: liblamf77mpi.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: liblammpi++.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_short' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_comm_map' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `op_intercept' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_errors_return' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Intracomm::current_op' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_comm_world' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned_char' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_char' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_err_map' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_group_empty' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_packed' collect2: ld returned 1 exit status

-------------------------------------------------------------------

It seems that it needs LAM/MPI.

But, the LAM/MPI has been installed:

PATH=/home/openmpi_123/bin:/home/boost_2010_8_1/boost_1_43_0: .......

I used ./bjam --prefix=mypath and then ./bjam and then ./bjam install Any help is appreciated.

Any help is appreciated.

Hi Jack, Can you sure to specify the right MPI wrapper compiler and make sure that it works, by compiling an MPI program using the C API, before building Boost. Matthias

Jack Bryan

9:20 p.m.

thanks for reply.The cluster has been installed with openMPI and mpich2.Do I still use MPI wrapper compiler to re-compile it ?What is meaning of "by compiling an MPI program using the C API, before building Boost."Any help is appreciated. Jack Aug. 3 2010

...

From: troyer@phys.ethz.ch To: boost-users@lists.boost.org Date: Tue, 3 Aug 2010 15:13:17 -0600 Subject: Re: [Boost-users] boost MPI install error

Sent from my iPad

On Aug 3, 2010, at 10:54 AM, Jack Bryan wrote:

...
Dear All:

I am trying to install boost on MPI clsuter with MPICH2.

After ./bjam install, I compile a test program provided by boost.org .

But I got errors: The program is : ----------------------------------------------------------------- #include <iostream> #include #include

namespace mpi = boost::mpi;

int main(int argc, char* argv[]) { mpi::environment env(argc, argv); mpi::communicator world; std::cout << "I am process " << world.rank() << " of " << world.size() << "." << std::endl; return 0; } --------------------------------------------------------------

Errors: ------------------------------------------------------------------ mpic++ -o testp2p test_p2p.cpp -I/home/boost_2010_8_1/boost_1_43_0 -L/home/boost_2010_8_1/boost_1_43_0/stage/lib -lboost_mpi -lboost_serialization /usr/bin/ld: warning: liblam.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: liblamf77mpi.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /usr/bin/ld: warning: liblammpi++.so.0, needed by /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so, not found (try using -rpath or -rpath-link) /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_short' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_comm_map' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `op_intercept' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_errors_return' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Intracomm::current_op' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_comm_world' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_unsigned_char' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_char' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `PMPI::Comm::mpi_err_map' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_group_empty' /home/boost_2010_8_1/boost_1_43_0/stage/lib/libboost_mpi.so: undefined reference to `lam_mpi_packed' collect2: ld returned 1 exit status

-------------------------------------------------------------------

It seems that it needs LAM/MPI.

But, the LAM/MPI has been installed:

PATH=/home/openmpi_123/bin:/home/boost_2010_8_1/boost_1_43_0: .......

I used ./bjam --prefix=mypath and then ./bjam and then ./bjam install Any help is appreciated.

Any help is appreciated.

Hi Jack,

Can you sure to specify the right MPI wrapper compiler and make sure that it works, by compiling an MPI program using the C API, before building Boost.

Matthias _______________________________________________ Boost-users mailing list Boost-users@lists.boost.org http://lists.boost.org/mailman/listinfo.cgi/boost-users

Matthias Troyer

11:14 p.m.

On 3 Aug 2010, at 15:20, Jack Bryan wrote:

...

thanks for reply. The cluster has been installed with openMPI and mpich2.

I doubt it since you actually include the LAM headers - look at the linker errors!

...

Do I still use MPI wrapper compiler to re-compile it ? What is meaning of "by compiling an MPI program using the C API, before building Boost."

Get a simple MPI program using the native C API to work first. Matthias

Jack Bryan

11:45 p.m.

thanks for reply. My test program works well. #include #include "mpi.h" int main(int argc, char* argv[]){ int rank, size; MPI_Init(0,0); MPI_Comm_size(MPI_COMM_WORLD, &size); MPI_Comm_rank(MPI_COMM_WORLD, &rank); printf("I am process %d out of total process \n\n ", rank, size ); MPI_Finalize(); return 0;} What may be the reason for the boost MPI install failure ? Any help is appreciated. thanks JACK

...

From: troyer@phys.ethz.ch Date: Tue, 3 Aug 2010 17:14:04 -0600 To: boost-users@lists.boost.org Subject: Re: [Boost-users] boost MPI install error

On 3 Aug 2010, at 15:20, Jack Bryan wrote:

...
thanks for reply. The cluster has been installed with openMPI and mpich2.

I doubt it since you actually include the LAM headers - look at the linker errors!

...
Do I still use MPI wrapper compiler to re-compile it ? What is meaning of "by compiling an MPI program using the C API, before building Boost."

Get a simple MPI program using the native C API to work first.

Matthias

_______________________________________________ Boost-users mailing list Boost-users@lists.boost.org http://lists.boost.org/mailman/listinfo.cgi/boost-users

Matthias Troyer

4 Aug 4 Aug

2:27 a.m.

On 3 Aug 2010, at 17:45, Jack Bryan wrote:

...

thanks for reply.

My test program works well.

#include #include "mpi.h"

int main(int argc, char* argv[]) { int rank, size; MPI_Init(0,0); MPI_Comm_size(MPI_COMM_WORLD, &size); MPI_Comm_rank(MPI_COMM_WORLD, &rank); printf("I am process %d out of total process \n\n ", rank, size ); MPI_Finalize(); return 0; }

What may be the reason for the boost MPI install failure ?

How do you compile this? And do you use the same compiler when building Boost? Matthias

Jack Bryan

2:58 a.m.

I used mpicc to compile it. I used ./bjam to compile and ./bjam install boost. Any help is appreciated. Jack From: troyer@phys.ethz.ch Date: Tue, 3 Aug 2010 20:27:12 -0600 To: boost-users@lists.boost.org Subject: Re: [Boost-users] boost MPI install error On 3 Aug 2010, at 17:45, Jack Bryan wrote:thanks for reply. My test program works well. #include #include "mpi.h" int main(int argc, char* argv[]){ int rank, size; MPI_Init(0,0); MPI_Comm_size(MPI_COMM_WORLD, &size); MPI_Comm_rank(MPI_COMM_WORLD, &rank); printf("I am process %d out of total process \n\n ", rank, size ); MPI_Finalize(); return 0;} What may be the reason for the boost MPI install failure ? How do you compile this? And do you use the same compiler when building Boost? Matthias _______________________________________________ Boost-users mailing list Boost-users@lists.boost.org http://lists.boost.org/mailman/listinfo.cgi/boost-users

Matthias Troyer

3:05 a.m.

On 3 Aug 2010, at 20:58, Jack Bryan wrote:

...

I used mpicc to compile it.

I used ./bjam to compile and ./bjam install boost.

Any help is appreciated.

Jack From: troyer@phys.ethz.ch Date: Tue, 3 Aug 2010 20:27:12 -0600 To: boost-users@lists.boost.org Subject: Re: [Boost-users] boost MPI install error

On 3 Aug 2010, at 17:45, Jack Bryan wrote:

thanks for reply.

My test program works well.

#include #include "mpi.h"

int main(int argc, char* argv[]) { int rank, size; MPI_Init(0,0); MPI_Comm_size(MPI_COMM_WORLD, &size); MPI_Comm_rank(MPI_COMM_WORLD, &rank); printf("I am process %d out of total process \n\n ", rank, size ); MPI_Finalize(); return 0; }

What may be the reason for the boost MPI install failure ?

How do you compile this? And do you use the same compiler when building Boost?

It seems that you use a different wrapper compiler when building MPI. Did you look at http://www.boost.org/doc/libs/1_43_0/doc/html/mpi/getting_started.html#mpi.c... and specify the *same* mpiCC that you use to compile your test programs? Matthias

Jack Bryan

5 Aug 5 Aug

3:25 p.m.

I used mpicc to compile it. I used ./bjam to compile and ./bjam install boost.Any help is appreciated. Jack From: troyer@phys.ethz.ch Date: Tue, 3 Aug 2010 21:05:23 -0600 To: boost-users@lists.boost.org Subject: Re: [Boost-users] boost MPI install error On 3 Aug 2010, at 20:58, Jack Bryan wrote:I used mpicc to compile it. I used ./bjam to compile and ./bjam install boost. Any help is appreciated. Jack From: troyer@phys.ethz.ch Date: Tue, 3 Aug 2010 20:27:12 -0600 To: boost-users@lists.boost.org Subject: Re: [Boost-users] boost MPI install error On 3 Aug 2010, at 17:45, Jack Bryan wrote:thanks for reply. My test program works well. #include #include "mpi.h" int main(int argc, char* argv[]){ int rank, size; MPI_Init(0,0); MPI_Comm_size(MPI_COMM_WORLD, &size); MPI_Comm_rank(MPI_COMM_WORLD, &rank); printf("I am process %d out of total process \n\n ", rank, size ); MPI_Finalize(); return 0;} What may be the reason for the boost MPI install failure ? How do you compile this? And do you use the same compiler when building Boost? It seems that you use a different wrapper compiler when building MPI. Did you look at http://www.boost.org/doc/libs/1_43_0/doc/html/mpi/getting_started.html#mpi.c... and specify the *same* mpiCC that you use to compile your test programs? Matthias _______________________________________________ Boost-users mailing list Boost-users@lists.boost.org http://lists.boost.org/mailman/listinfo.cgi/boost-users

Jürgen Hunold

3:54 p.m.

On Thursday, 5. August 2010 17:25:08 you wrote:

...

I used mpicc to compile it.

I used ./bjam to compile and ./bjam install boost.

Then it would be interesting which MPI wrapper was detected. Please take a look at "bjam --help" and then scan the output of "bjam --debug-configuration" for the section | ===============MPI Auto-configuration=============== which in my case contains: | Found recent LAM-MPI or Open MPI wrapper compiler: mpic++ | MPI compilation flags: -I/usr/lib/openmpi/include -I /usr/lib/openmpi/include/openmpi -pthread

...

Any help is appreciated.

Hope this helps. I suspect you must configure your MPI wrapper in user- config.jam. yours, Jürgen -- * Dipl.-Math. Jürgen Hunold ! Ingenieurgesellschaft für * voice: ++49 511 262926 57 ! Verkehrs- und Eisenbahnwesen mbH * fax : ++49 511 262926 99 ! Lister Straße 15 * juergen.hunold@ivembh.de ! www.ivembh.de * * Geschäftsführer: ! Sitz des Unternehmens: Hannover * Prof. Dr.-Ing. Thomas Siefer ! Amtsgericht Hannover, HRB 56965 * PD Dr.-Ing. Alfons Radtke !

Matthias Troyer

4:54 p.m.

On 5 Aug 2010, at 09:25, Jack Bryan wrote:

...

I used mpicc to compile it.

I used ./bjam to compile and ./bjam install boost.

What do you specify in the using mpi: ..... statement? It seems you pick up the wrong mpiCC there

...

Any help is appreciated.

Jack

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