Hi there,_______________________________________________I've been trying to get GP-GOMEA running in a dockerized environment, which is a project that is built using Boost.
As part of the build process, the source code is compiled by the
g++
compiler, using the flag-lboost_numpy37
, which fails because (it seems) numpy cannot be found.I've reported this also as an issue also in the boost repository, but mclow advised me to send this to the boost-users mailinglist too.
I've create the following
Dockerfile
as a minimal test case, which runs into the same problem. I'm a bit of a noob when it comes to Boost and numpy, but from what I found so far on the web, this should work (but it doesn't)FROM ubuntu:20.04 ENV DEBIAN_FRONTEND noninteractive RUN apt-get update && apt-get upgrade -y && apt-get clean RUN apt-get install -y curl python3.7 python3-dev python3-distutils python3-numpy # Install latest boost version RUN apt-get -y install wget g++ RUN wget https://dl.bintray.com/boostorg/release/1.75.0/source/boost_1_75_0.tar.bz2 && \ tar --bzip2 -xf boost_1_75_0.tar.bz2 && \ cd boost_1_75_0 && \ # this will generate ./b2 ./bootstrap.sh --prefix=/usr/local && \ ./b2 --with=all install && \ sh -c 'echo "/usr/local/lib" >> /etc/ld.so.conf.d/local.conf' && \ ldconfig # Check numpy installation RUN find / -name "numpy.hpp" RUN find / -name "libboost_numpy37.so" RUN find / -name "libboost_numpy3.so" RUN find / -name "libboost_numpy.so" RUN ld -lboost_numpy37 --verbose
This eventually results in the following error:
The command '/bin/sh -c ld -lboost_numpy37 --verbose' returned a non-zero code: 1
, because it could not find anylibboost_numpy37.so
orlibboost_numpy37.o
file.The full logs are attached in the GH issue linked above.
Did anyone encounter something similar, or does anyone have an idea what could cause this?Any help is much appreciated!
-Roy
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